Variant report

Variant	rs60643160
Chromosome Location	chr8:69499930-69499931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11984913	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11987961	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11988777	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11992043	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11992254	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1347382	0.92[ASN][1000 genomes]
rs1434920	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1434940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16934696	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16934717	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1836519	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2117492	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289831	0.85[EUR][1000 genomes]
rs2289832	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2380473	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2380475	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2380476	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2380477	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2890431	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4455810	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4559226	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4559227	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4576413	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4995316	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55686711	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55880104	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56042829	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56093828	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56765555	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57010866	0.85[EUR][1000 genomes]
rs59050152	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59121536	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59212785	0.84[EUR][1000 genomes]
rs60521673	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60940064	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472406	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472407	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6983285	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6984964	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6989036	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6989387	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6989643	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7000982	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003926	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7004410	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7009978	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7010609	0.86[ASN][1000 genomes]
rs73266585	0.85[EUR][1000 genomes]
rs73268455	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73268457	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73268472	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73268481	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73268487	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73683561	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814002	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7826286	0.89[ASN][1000 genomes]
rs7826288	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs892705	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9692797	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9692812	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9693077	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9693078	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9694215	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv890983	chr8:69447339-69503062	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69495800-69500600	Enhancers	NHLF	lung
2	chr8:69498200-69500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:69498400-69500000	Weak transcription	HSMM	muscle
4	chr8:69498600-69501400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:69498800-69501200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:69499000-69500000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links