Variant report

Variant	rs60645576
Chromosome Location	chr9:110243855-110243856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110242425..110245039-chr9:110248076..110250038,3	K562	blood:
2	chr9:110243056..110245207-chr9:110807141..110809330,2	MCF-7	breast:
3	chr9:110243474..110246335-chr9:111191913..111193527,2	MCF-7	breast:
4	chr9:110242124..110246381-chr9:110250580..110253838,4	K562	blood:
5	chr9:110227183..110228814-chr9:110241674..110244053,2	MCF-7	breast:
6	chr9:110201238..110203067-chr9:110242097..110244631,2	MCF-7	breast:
7	chr9:110243039..110245357-chr9:110265653..110268473,2	MCF-7	breast:
8	chr9:110243091..110244003-chr9:111327759..111328474,2	MCF-7	breast:
9	chr9:110243041..110245201-chr9:110246252..110249576,3	K562	blood:
10	chr9:110241813..110245896-chr9:110516233..110519941,6	MCF-7	breast:
11	chr9:110183651..110188912-chr9:110241760..110247233,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34660570	0.88[AFR][1000 genomes]
rs45512100	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110235600-110247600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:110235800-110248400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:110236000-110248400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:110241600-110245800	Weak transcription	Stomach Mucosa	stomach
5	chr9:110242200-110247400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:110242600-110244000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr9:110242800-110247400	Weak transcription	Placenta	Placenta
8	chr9:110242800-110249000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:110243000-110249600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:110243200-110245800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:110243200-110246600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:110243200-110246600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:110243200-110247200	Weak transcription	HMEC	breast
14	chr9:110243200-110247600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:110243200-110247800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:110243200-110247800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:110243200-110248000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:110243200-110248400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:110243200-110248800	Weak transcription	Fetal Lung	lung
20	chr9:110243400-110244000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:110243400-110244000	Enhancers	Hela-S3	cervix
22	chr9:110243400-110244400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:110243400-110244600	Enhancers	NHDF-Ad	bronchial
24	chr9:110243400-110247400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:110243400-110247800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:110243600-110244000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:110243600-110244000	Enhancers	A549	lung
28	chr9:110243600-110244400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:110243600-110244400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr9:110243600-110244600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:110243600-110247200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:110243600-110247400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:110243600-110247800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr9:110243600-110247800	Weak transcription	Esophagus	oesophagus
35	chr9:110243600-110248000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:110243800-110244000	Enhancers	HSMMtube	muscle
37	chr9:110243800-110244000	Enhancers	NHEK	skin
38	chr9:110243800-110245800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:110243800-110246000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:110243800-110246400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:110243800-110247400	Weak transcription	Psoas Muscle	Psoas
42	chr9:110243800-110247400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:110243800-110247600	Weak transcription	Osteobl	bone

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