Variant report

Variant	rs60646584
Chromosome Location	chr11:8821483-8821484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8820429..8822256-chr11:8823665..8826630,2	K562	blood:
2	chr11:8715578..8718169-chr11:8819916..8823970,3	MCF-7	breast:
3	chr11:8709766..8713200-chr11:8820077..8823864,3	K562	blood:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1683122	chr11:8821483-8821504	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus
6	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain
7	chr11:8809200-8826600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:8809200-8829200	Weak transcription	Fetal Kidney	kidney
9	chr11:8811800-8827000	Weak transcription	HMEC	breast
10	chr11:8811800-8828600	Weak transcription	Hela-S3	cervix
11	chr11:8811800-8828800	Weak transcription	Aorta	Aorta
12	chr11:8811800-8830400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:8814200-8828400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:8814800-8825400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:8815000-8827800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:8815200-8826800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:8815400-8822000	Weak transcription	HUVEC	blood vessel
19	chr11:8815600-8822600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:8815600-8825200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:8815800-8827800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8816000-8822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:8816400-8822200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:8816400-8822400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:8816400-8825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:8816600-8822400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:8816600-8822400	Weak transcription	Lung	lung
29	chr11:8816600-8826600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:8816600-8827400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr11:8816600-8828400	Weak transcription	NHDF-Ad	bronchial
32	chr11:8816600-8828800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:8816600-8830000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:8816600-8830600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:8816800-8821800	Weak transcription	Colonic Mucosa	Colon
36	chr11:8816800-8821800	Weak transcription	Psoas Muscle	Psoas
37	chr11:8816800-8822000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:8816800-8825200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:8816800-8828600	Weak transcription	Small Intestine	intestine
40	chr11:8817000-8822000	Weak transcription	Fetal Heart	heart
41	chr11:8817000-8822200	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:8817000-8828600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:8817200-8825600	Weak transcription	Spleen	Spleen
44	chr11:8817200-8828600	Weak transcription	Fetal Intestine Small	intestine
45	chr11:8817400-8828200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:8817600-8822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:8817600-8825000	Weak transcription	NHLF	lung
48	chr11:8819000-8821600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:8819000-8825600	Weak transcription	Adipose Nuclei	Adipose
50	chr11:8819200-8826600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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