Variant report

Variant	rs60668657
Chromosome Location	chr8:68307079-68307080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11991369	1.00[AMR][1000 genomes]
rs11993447	1.00[AMR][1000 genomes]
rs11996409	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55763872	1.00[AMR][1000 genomes]
rs56317475	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:68301000-68308000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:68304200-68307400	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:68304200-68307600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:68305200-68307800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr8:68305800-68307200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:68305800-68308000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr8:68305800-68308000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr8:68305800-68308000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:68305800-68308000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:68306000-68308800	Enhancers	Primary T cells from cord blood	blood
12	chr8:68306200-68307200	Enhancers	Primary B cells from cord blood	blood
13	chr8:68306200-68307800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:68306200-68307800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:68306200-68308000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr8:68306600-68308000	Weak transcription	Thymus	Thymus
17	chr8:68307000-68308200	Weak transcription	Fetal Thymus	thymus
18	chr8:68307000-68312200	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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