Variant report

Variant	rs60671060
Chromosome Location	chr9:95834360-95834361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95817800..95819873-chr9:95833973..95836077,2	MCF-7	breast:
2	chr9:95832871..95836106-chr9:95837234..95840291,5	K562	blood:
3	chr9:95818455..95825266-chr9:95831322..95836031,9	K562	blood:
4	chr9:95832871..95835719-chr9:95837234..95839354,3	K562	blood:
5	chr9:95825270..95827646-chr9:95832621..95835628,3	K562	blood:
6	chr9:95833654..95836498-chr9:95895310..95897645,2	MCF-7	breast:
7	chr9:95833185..95836026-chr9:95840723..95843661,2	MCF-7	breast:
8	chr9:95750405..95751264-chr9:95834116..95834978,4	MCF-7	breast:
9	chr9:95827710..95829227-chr9:95833647..95835917,2	K562	blood:
10	chr9:95832455..95836206-chr9:95854622..95857563,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10821063	0.84[ASN][1000 genomes]
rs10992622	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992623	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12555029	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077176	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077177	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077637	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56000948	0.92[ASN][1000 genomes]
rs57327517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479448	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7019574	0.89[ASN][1000 genomes]
rs7036869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046192	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7859109	0.92[ASN][1000 genomes]
rs7870697	0.92[ASN][1000 genomes]
rs7870953	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95822600-95834400	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:95824600-95854000	Weak transcription	Gastric	stomach
3	chr9:95827600-95839800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95828200-95834400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:95828200-95841600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:95828400-95834600	Weak transcription	Adipose Nuclei	Adipose
7	chr9:95828400-95834600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:95828400-95834600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:95828400-95834600	Weak transcription	Lung	lung
10	chr9:95828400-95840000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:95828600-95840000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:95828600-95845000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:95829600-95834400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr9:95830600-95840200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:95830800-95836200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr9:95831000-95834400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:95831400-95836400	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr9:95831800-95834800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:95831800-95837400	Strong transcription	Primary T cells from cord blood	blood
20	chr9:95832800-95838600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:95833000-95835400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr9:95833000-95842800	Weak transcription	GM12878-XiMat	blood
23	chr9:95833200-95837600	Enhancers	Colon Smooth Muscle	Colon
24	chr9:95833400-95834600	Weak transcription	Psoas Muscle	Psoas
25	chr9:95833400-95834800	Strong transcription	Primary B cells from cord blood	blood
26	chr9:95833400-95835000	Enhancers	K562	blood
27	chr9:95833400-95835400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:95833600-95835600	Enhancers	Fetal Muscle Leg	muscle
29	chr9:95833600-95837400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:95833800-95834400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:95833800-95834600	Enhancers	Stomach Smooth Muscle	stomach
32	chr9:95833800-95836800	Enhancers	Ovary	ovary
33	chr9:95834000-95834400	Genic enhancers	Fetal Thymus	thymus
34	chr9:95834000-95834400	Genic enhancers	Thymus	Thymus
35	chr9:95834000-95834600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
36	chr9:95834000-95834600	Enhancers	Rectal Smooth Muscle	rectum
37	chr9:95834000-95835000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr9:95834000-95835200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr9:95834000-95835200	Enhancers	Dnd41	blood
40	chr9:95834000-95835400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:95834000-95835400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr9:95834000-95835400	Enhancers	Liver	Liver
43	chr9:95834000-95835400	Enhancers	Placenta	Placenta
44	chr9:95834000-95835600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr9:95834200-95834800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:95834200-95835000	Genic enhancers	Primary B cells from peripheral blood	blood
47	chr9:95834200-95835000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:95834200-95835000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:95834200-95835000	Enhancers	Right Atrium	heart
50	chr9:95834200-95835200	Enhancers	Right Ventricle	heart

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