Variant report

Variant	rs60671097
Chromosome Location	chr3:43280265-43280266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17254504	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2372351	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4504148	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55919553	0.87[AFR][1000 genomes]
rs55988644	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56291522	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56745072	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57757985	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs60971695	0.87[AFR][1000 genomes]
rs6766079	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6791341	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73072920	0.84[AFR][1000 genomes]
rs73088738	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73088757	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7633546	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43278200-43280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43278400-43284200	Weak transcription	Thymus	Thymus
3	chr3:43278400-43285000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:43278600-43280800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:43280200-43282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:43280200-43282000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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