Variant report

Variant	rs60678751
Chromosome Location	chr6:39063943-39063944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10305516	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10305525	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2268633	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2268634	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2268635	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2268636	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39021200-39072000	Weak transcription	Gastric	stomach
2	chr6:39027400-39073000	Weak transcription	Pancreas	Pancrea
3	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:39053000-39072400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:39055200-39069800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:39058000-39068200	Weak transcription	Thymus	Thymus
7	chr6:39058400-39071200	Weak transcription	Psoas Muscle	Psoas
8	chr6:39058400-39072000	Weak transcription	Left Ventricle	heart
9	chr6:39058400-39072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:39058400-39073000	Weak transcription	Lung	lung
11	chr6:39060400-39073200	Weak transcription	Fetal Heart	heart
12	chr6:39060600-39072800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:39062000-39072000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:39062600-39065000	Weak transcription	Fetal Lung	lung
15	chr6:39062600-39072200	Weak transcription	Small Intestine	intestine
16	chr6:39063400-39069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:39063800-39072200	Weak transcription	Liver	Liver
18	chr6:39063800-39076400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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