Variant report

Variant	rs60683040
Chromosome Location	chr2:64006936-64006937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59016830	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891005	1.00[AMR][1000 genomes]
rs72891027	1.00[AMR][1000 genomes]
rs72891067	1.00[AMR][1000 genomes]
rs72891091	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:63994800-64008200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:63998400-64008000	Weak transcription	NHLF	lung
4	chr2:64002800-64007600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:64006200-64007600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:64006200-64008600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:64006200-64010000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:64006200-64011200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:64006400-64009000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:64006400-64010200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:64006400-64010400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:64006600-64007200	Enhancers	Brain Substantia Nigra	brain
13	chr2:64006600-64007400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:64006600-64007600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:64006600-64007600	Enhancers	Ovary	ovary
16	chr2:64006600-64008400	Enhancers	Aorta	Aorta
17	chr2:64006600-64008400	Enhancers	Fetal Muscle Leg	muscle
18	chr2:64006600-64008800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:64006600-64009000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:64006600-64009400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:64006600-64010400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr2:64006800-64007200	Enhancers	Brain Anterior Caudate	brain
23	chr2:64006800-64007200	Weak transcription	Psoas Muscle	Psoas
24	chr2:64006800-64007600	Enhancers	Brain Hippocampus Middle	brain

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