Variant report

Variant	rs60684557
Chromosome Location	chr4:167349903-167349904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10004921	0.92[EUR][1000 genomes]
rs10005015	0.92[EUR][1000 genomes]
rs10011565	0.92[EUR][1000 genomes]
rs10015825	0.92[EUR][1000 genomes]
rs10016620	0.92[EUR][1000 genomes]
rs10016816	0.92[EUR][1000 genomes]
rs10019123	0.92[EUR][1000 genomes]
rs10019990	0.92[EUR][1000 genomes]
rs10022749	0.92[EUR][1000 genomes]
rs10027005	0.92[EUR][1000 genomes]
rs10027008	0.92[EUR][1000 genomes]
rs10028908	0.92[EUR][1000 genomes]
rs10440459	0.92[EUR][1000 genomes]
rs11930256	0.92[EUR][1000 genomes]
rs11930305	0.92[EUR][1000 genomes]
rs28483938	0.92[EUR][1000 genomes]
rs28580222	0.92[EUR][1000 genomes]
rs28660410	0.92[EUR][1000 genomes]
rs28826359	0.92[EUR][1000 genomes]
rs55983948	0.92[EUR][1000 genomes]
rs55984039	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56144040	0.92[EUR][1000 genomes]
rs56189533	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56366428	0.92[EUR][1000 genomes]
rs56667160	0.92[EUR][1000 genomes]
rs57128621	0.92[EUR][1000 genomes]
rs57278244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59309844	0.92[EUR][1000 genomes]
rs59847392	0.92[EUR][1000 genomes]
rs60364040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60535419	0.92[EUR][1000 genomes]
rs60588643	0.92[EUR][1000 genomes]
rs60801651	0.92[EUR][1000 genomes]
rs60837569	0.92[EUR][1000 genomes]
rs61652525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826512	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6827596	0.92[EUR][1000 genomes]
rs6827671	0.92[EUR][1000 genomes]
rs6828109	0.92[EUR][1000 genomes]
rs6828227	0.86[EUR][1000 genomes]
rs6828461	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6832073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853713	0.92[EUR][1000 genomes]
rs72689598	0.92[EUR][1000 genomes]
rs72689599	0.92[EUR][1000 genomes]
rs72693581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693588	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7669214	0.92[EUR][1000 genomes]
rs7681512	0.92[EUR][1000 genomes]
rs9308127	0.92[EUR][1000 genomes]
rs964844	0.92[EUR][1000 genomes]
rs9993036	0.92[EUR][1000 genomes]
rs9996040	0.92[EUR][1000 genomes]
rs9997228	0.92[EUR][1000 genomes]
rs9997421	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034421	chr4:166961339-167893289	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537339	chr4:166961339-167893289	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032009	chr4:167154813-167403235	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880900	chr4:167155443-167368812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv880967	chr4:167185391-167366567	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv881405	chr4:167193885-167628013	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023051	chr4:167304814-168211540	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv537340	chr4:167304814-168211540	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1028788	chr4:167315021-167403235	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:167345000-167353000	Weak transcription	HMEC	breast
2	chr4:167345200-167353800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:167346600-167353000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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