Variant report

Variant	rs6068772
Chromosome Location	chr20:52696990-52696991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1543703	0.80[JPT][hapmap]
rs2870307	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs290396	0.99[ASN][1000 genomes]
rs6068773	0.84[EUR][1000 genomes]
rs6068774	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52693000-52701200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:52693400-52698600	Weak transcription	Stomach Mucosa	stomach
3	chr20:52693800-52697400	Enhancers	Primary hematopoietic stem cells	blood
4	chr20:52693800-52699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:52694200-52697600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:52694400-52697400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr20:52694800-52697200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr20:52695600-52700200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr20:52695800-52698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr20:52696000-52698600	Weak transcription	A549	lung
11	chr20:52696400-52697200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr20:52696600-52697600	Weak transcription	GM12878-XiMat	blood
13	chr20:52696600-52698600	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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