Variant report

Variant	rs60700381
Chromosome Location	chr5:176968699-176968700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:176967408..176971032-chr5:176979166..176982840,3	K562	blood:
2	chr5:176963336..176966348-chr5:176968425..176973218,7	K562	blood:
3	chr5:176967931..176970942-chr5:176971781..176975571,4	MCF-7	breast:
4	chr5:176924189..176925735-chr5:176967394..176969566,2	MCF-7	breast:
5	chr5:176968290..176969872-chr5:176978355..176980104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272459	Chromatin interaction
ENSG00000146067	Chromatin interaction
ENSG00000196923	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2279398	0.85[AMR][1000 genomes]
rs2306761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	nsv883164	chr5:176780545-177003616	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv883177	chr5:176868358-177003616	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv5147	chr5:176938196-176983018	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:176944800-176972800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:176946000-176970000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:176946200-176969800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:176946200-176970200	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:176946200-176971000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr5:176946400-176969800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:176946400-176970000	Strong transcription	Thymus	Thymus
8	chr5:176946600-176969800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:176946800-176977200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:176947000-176979000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:176948200-176969600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:176950000-176978600	Strong transcription	Dnd41	blood
13	chr5:176950400-176971200	Strong transcription	Primary T cells from cord blood	blood
14	chr5:176950800-176970600	Strong transcription	HepG2	liver
15	chr5:176959200-176975200	Weak transcription	Fetal Brain Male	brain
16	chr5:176960000-176979400	Weak transcription	Stomach Mucosa	stomach
17	chr5:176962400-176980000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:176963200-176969600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr5:176963800-176969800	Strong transcription	Hela-S3	cervix
20	chr5:176963800-176970800	Strong transcription	Primary B cells from cord blood	blood
21	chr5:176964200-176980000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:176965400-176969200	Weak transcription	GM12878-XiMat	blood
23	chr5:176965600-176969000	Weak transcription	Fetal Kidney	kidney
24	chr5:176965800-176972600	Weak transcription	HUVEC	blood vessel
25	chr5:176965800-176972800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:176965800-176972800	Weak transcription	NH-A	brain
27	chr5:176966000-176969000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:176966000-176969200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:176966000-176969800	Weak transcription	Brain Angular Gyrus	brain
30	chr5:176966000-176970200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:176966000-176972800	Weak transcription	Colonic Mucosa	Colon
32	chr5:176966000-176972800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr5:176966000-176972800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr5:176966000-176972800	Weak transcription	Small Intestine	intestine
35	chr5:176966000-176973000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:176966200-176969200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:176966200-176970400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:176966200-176970400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:176966200-176971000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:176966200-176973000	Weak transcription	Brain Germinal Matrix	brain
41	chr5:176966200-176973200	Weak transcription	Fetal Brain Female	brain
42	chr5:176966200-176977400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:176966200-176978400	Weak transcription	Spleen	Spleen
44	chr5:176966200-176979400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:176966200-176979800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:176966200-176980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:176966400-176969000	Weak transcription	A549	lung
48	chr5:176966400-176969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:176966600-176968800	Weak transcription	Liver	Liver
50	chr5:176966600-176969000	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links