Variant report

Variant	rs60707509
Chromosome Location	chr6:24693940-24693941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24693145..24694972-chr6:24714039..24715986,2	K562	blood:
2	chr6:24666263..24668516-chr6:24692671..24695712,3	K562	blood:
3	chr6:24693047..24695741-chr6:24720469..24723626,3	K562	blood:
4	chr6:24689874..24693452-chr6:24693526..24695958,4	K562	blood:

Variant related genes	Relation type
ENSG00000112304	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000111802	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12662779	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16889592	0.83[AMR][1000 genomes]
rs1883591	0.82[ASN][1000 genomes]
rs2073013	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2294686	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2876679	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3181236	0.83[AMR][1000 genomes]
rs3212229	0.83[AMR][1000 genomes]
rs3756815	0.82[ASN][1000 genomes]
rs9356944	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9358787	0.82[ASN][1000 genomes]
rs9366579	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9379682	0.84[AMR][1000 genomes]
rs9379686	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393575	0.82[ASN][1000 genomes]
rs9461050	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467257	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24668200-24699800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:24669000-24701200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:24669400-24701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:24674200-24700000	Weak transcription	Fetal Lung	lung
5	chr6:24674600-24703400	Weak transcription	Aorta	Aorta
6	chr6:24674800-24698200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:24674800-24702200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24674800-24702200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:24674800-24702600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:24676600-24702600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:24678200-24699600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:24678200-24702600	Weak transcription	HSMMtube	muscle
13	chr6:24678800-24701200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:24678800-24701600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:24679400-24700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:24679600-24699800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:24680000-24705400	Weak transcription	Colonic Mucosa	Colon
18	chr6:24680600-24702600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:24680800-24701600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:24681200-24705600	Weak transcription	Ovary	ovary
21	chr6:24681400-24701800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:24682400-24703000	Weak transcription	Lung	lung
23	chr6:24682800-24699000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:24682800-24701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:24682800-24702200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:24682800-24702200	Weak transcription	Fetal Stomach	stomach
27	chr6:24683000-24701400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:24683000-24702200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:24684200-24701800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:24684400-24697800	Weak transcription	Fetal Heart	heart
31	chr6:24684400-24699800	Weak transcription	HepG2	liver
32	chr6:24684600-24701200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:24684800-24698800	Weak transcription	K562	blood
34	chr6:24684800-24705400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:24684800-24705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:24684800-24709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:24685000-24698200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:24685400-24698600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:24685800-24703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:24686200-24703000	Weak transcription	HSMM	muscle
41	chr6:24686200-24703400	Weak transcription	Fetal Kidney	kidney
42	chr6:24687400-24694400	Weak transcription	GM12878-XiMat	blood
43	chr6:24687600-24699800	Weak transcription	Brain Anterior Caudate	brain
44	chr6:24687600-24699800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:24687600-24701400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:24687600-24703000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:24687600-24703400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:24687800-24699000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:24688000-24704000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:24688200-24699000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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