Variant report

Variant	rs60707684
Chromosome Location	chr7:66871878-66871879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11974186	0.89[AFR][1000 genomes]
rs11980994	1.00[AFR][1000 genomes]
rs11984325	0.89[AFR][1000 genomes]
rs2901397	0.82[AFR][1000 genomes]
rs59523866	1.00[AFR][1000 genomes]
rs61289047	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66870800-66873200	Enhancers	Colon Smooth Muscle	Colon
2	chr7:66871200-66872800	Enhancers	Rectal Smooth Muscle	rectum
3	chr7:66871200-66873200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:66871600-66872200	Enhancers	Fetal Heart	heart
5	chr7:66871600-66872600	Enhancers	Fetal Brain Female	brain
6	chr7:66871600-66873000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:66871600-66873000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:66871600-66873200	Enhancers	Fetal Brain Male	brain
9	chr7:66871600-66873200	Enhancers	Fetal Lung	lung
10	chr7:66871800-66872200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:66871800-66872200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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