Variant report

Variant	rs60715049
Chromosome Location	chr15:40746725-40746726
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40729975..40738939-chr15:40745780..40750666,13	K562	blood:
2	chr15:40746042..40747567-chr15:40761663..40764195,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf57-2	chr15:40746476-40746838	ENSG00000259364.1

Variant related genes	Relation type
ENSG00000169105	Chromatin interaction
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74011157	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40734800-40747000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:40734800-40751000	Weak transcription	Aorta	Aorta
3	chr15:40735200-40747800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:40736800-40748600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:40738000-40750400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:40738200-40746800	Weak transcription	Adipose Nuclei	Adipose
7	chr15:40738200-40747000	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:40738200-40751000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:40738400-40746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:40738400-40747000	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:40738400-40747200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:40738600-40746800	Weak transcription	NHLF	lung
13	chr15:40738800-40746800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:40740600-40749600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:40741200-40747800	Enhancers	K562	blood
16	chr15:40742200-40747800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:40742200-40749200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr15:40742200-40749600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:40742600-40747000	Enhancers	Dnd41	blood
21	chr15:40742600-40749400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:40742600-40750000	Enhancers	Fetal Intestine Large	intestine
23	chr15:40742800-40749600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:40742800-40750000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:40743400-40747400	Enhancers	Thymus	Thymus
26	chr15:40743400-40748000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:40743400-40749200	Enhancers	Fetal Thymus	thymus
28	chr15:40743600-40747800	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:40743600-40749400	Enhancers	Spleen	Spleen
30	chr15:40743800-40747200	Weak transcription	Brain Anterior Caudate	brain
31	chr15:40743800-40748600	Weak transcription	Brain Substantia Nigra	brain
32	chr15:40744000-40746800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr15:40744000-40747200	Enhancers	Primary B cells from cord blood	blood
34	chr15:40744000-40750000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:40744200-40756400	Weak transcription	Fetal Kidney	kidney
36	chr15:40744400-40746800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr15:40744400-40746800	Weak transcription	Gastric	stomach
38	chr15:40744400-40746800	Enhancers	Hela-S3	cervix
39	chr15:40744400-40749000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:40744400-40749200	Enhancers	Small Intestine	intestine
41	chr15:40744600-40747200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:40744600-40747400	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr15:40744600-40748000	Enhancers	Duodenum Mucosa	Duodenum
44	chr15:40744600-40749600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr15:40744800-40747000	Weak transcription	Ovary	ovary
46	chr15:40744800-40747400	Enhancers	GM12878-XiMat	blood
47	chr15:40744800-40748000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr15:40744800-40749800	Enhancers	HepG2	liver
49	chr15:40745000-40747600	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr15:40745000-40747600	Enhancers	Primary hematopoietic stem cells	blood

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