Variant report

Variant	rs60744940
Chromosome Location	chr13:38829092-38829093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56704563	1.00[AMR][1000 genomes]
rs73456087	1.00[AMR][1000 genomes]
rs73458106	1.00[AMR][1000 genomes]
rs73458115	1.00[AMR][1000 genomes]
rs73458120	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3401610	chr13:38797001-38829340	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900004	chr13:38803974-38900435	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38802000-38831200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38823800-38829200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:38828000-38829600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:38828200-38830200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:38828400-38831400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr13:38828800-38829800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:38828800-38830200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:38829000-38829200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:38829000-38829800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:38829000-38829800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:38829000-38830200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:38829000-38830200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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