Variant report

Variant	rs60748297
Chromosome Location	chr3:109954351-109954352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1461744	1.00[AMR][1000 genomes]
rs57224506	1.00[AMR][1000 genomes]
rs72939022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109953400-109954400	Enhancers	NHDF-Ad	bronchial
2	chr3:109953400-109955200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:109954200-109954400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:109954200-109954400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:109954200-109954600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:109954200-109954600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:109954200-109954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:109954200-109954800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:109954200-109955000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:109954200-109955800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:109954200-109956800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:109954200-109956800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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