Variant report

Variant	rs60753357
Chromosome Location	chr3:55825067-55825068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56759127	1.00[AFR][1000 genomes]
rs73831509	1.00[AFR][1000 genomes]
rs73831511	1.00[AFR][1000 genomes]
rs73831514	1.00[AFR][1000 genomes]
rs73834023	1.00[AFR][1000 genomes]
rs73834025	1.00[AFR][1000 genomes]
rs73834026	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55817200-55830600	Weak transcription	Pancreas	Pancrea
2	chr3:55821600-55825200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:55823000-55826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:55823800-55825400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:55824400-55825200	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:55824400-55825200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:55824800-55825200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:55824800-55825200	Enhancers	Spleen	Spleen
9	chr3:55824800-55825200	Enhancers	Hela-S3	cervix
10	chr3:55824800-55825400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:55825000-55825200	Enhancers	Fetal Lung	lung
12	chr3:55825000-55825200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:55825000-55826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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