Variant report

Variant	rs60756488
Chromosome Location	chr18:13269144-13269145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13215870..13219529-chr18:13264681..13269874,5	MCF-7	breast:
2	chr18:13221636..13223184-chr18:13266947..13269531,2	MCF-7	breast:
3	chr18:13268397..13272481-chr18:13273229..13276163,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267239	Chromatin interaction
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58025644	1.00[AMR][1000 genomes]
rs59502095	1.00[AMR][1000 genomes]
rs59949510	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60108757	1.00[AMR][1000 genomes]
rs60389696	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61460772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:13261200-13282200	Weak transcription	Small Intestine	intestine
4	chr18:13262200-13270000	Weak transcription	Stomach Mucosa	stomach
5	chr18:13263800-13269200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr18:13263800-13269600	Enhancers	Fetal Brain Female	brain
7	chr18:13263800-13272600	Enhancers	Fetal Heart	heart
8	chr18:13264200-13269200	Weak transcription	Fetal Intestine Large	intestine
9	chr18:13265200-13269400	Enhancers	Brain Cingulate Gyrus	brain
10	chr18:13265400-13270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr18:13265600-13270200	Enhancers	Brain Angular Gyrus	brain
12	chr18:13266200-13269600	Enhancers	Brain Hippocampus Middle	brain
13	chr18:13266200-13270000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:13266200-13271400	Enhancers	Brain Germinal Matrix	brain
15	chr18:13266400-13269400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:13266400-13269600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:13266400-13272600	Enhancers	Fetal Stomach	stomach
18	chr18:13266800-13270200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr18:13266800-13270800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr18:13266800-13271200	Enhancers	Primary T cells from cord blood	blood
21	chr18:13266800-13271400	Weak transcription	Esophagus	oesophagus
22	chr18:13266800-13271800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr18:13267000-13269600	Enhancers	Adipose Nuclei	Adipose
24	chr18:13267000-13270000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr18:13267000-13270000	Enhancers	Fetal Kidney	kidney
26	chr18:13267000-13271000	Enhancers	Brain Anterior Caudate	brain
27	chr18:13267200-13270400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr18:13267200-13276000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr18:13267400-13269400	Enhancers	HUVEC	blood vessel
30	chr18:13267400-13270000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr18:13267400-13270200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr18:13267400-13270200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr18:13267400-13270400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr18:13267400-13270600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr18:13267400-13270600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr18:13267400-13272800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr18:13267600-13269200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr18:13267600-13269600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr18:13267600-13270200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr18:13267600-13270600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr18:13267800-13269200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr18:13267800-13270000	Enhancers	NH-A	brain
43	chr18:13267800-13270400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr18:13267800-13272800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr18:13268000-13269200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr18:13268000-13269200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr18:13268000-13269200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr18:13268000-13269800	Enhancers	Fetal Thymus	thymus
49	chr18:13268000-13270000	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr18:13268200-13272200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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