Variant report

Variant	rs6076030
Chromosome Location	chr20:23115414-23115415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23115096..23116873-chr20:23336081..23338502,2	K562	blood:
2	chr20:23062655..23064534-chr20:23114013..23116942,2	K562	blood:
3	chr20:23071726..23074715-chr20:23114683..23116931,2	K562	blood:

Variant related genes	Relation type
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6036310	0.85[CEU][hapmap]
rs6036318	0.83[ASN][1000 genomes]
rs6076027	0.85[CEU][hapmap]
rs6083012	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6083020	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs699794	0.85[CEU][hapmap]
rs699795	0.85[CEU][hapmap]
rs844851	0.85[CEU][hapmap]
rs844852	0.86[CEU][hapmap]
rs844855	0.86[CEU][hapmap]
rs844857	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus
2	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
5	chr20:23112600-23116200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr20:23112600-23120600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr20:23114200-23115800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr20:23114200-23116400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:23114200-23120200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:23114200-23121800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr20:23114400-23116800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr20:23114600-23116200	Weak transcription	Adipose Nuclei	Adipose
13	chr20:23114600-23116200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr20:23114600-23116400	Weak transcription	Psoas Muscle	Psoas
15	chr20:23114600-23116400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr20:23114600-23116800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr20:23114600-23116800	Weak transcription	Placenta	Placenta
18	chr20:23114600-23116800	Weak transcription	Lung	lung
19	chr20:23114600-23116800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr20:23114600-23117000	Enhancers	K562	blood
21	chr20:23114600-23117600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr20:23114600-23117600	Weak transcription	Left Ventricle	heart
23	chr20:23114600-23119200	Weak transcription	Spleen	Spleen
24	chr20:23114600-23120400	Weak transcription	Fetal Lung	lung
25	chr20:23114600-23121800	Weak transcription	Right Ventricle	heart
26	chr20:23114600-23122800	Weak transcription	Right Atrium	heart
27	chr20:23114800-23116200	Weak transcription	Dnd41	blood
28	chr20:23114800-23116200	Weak transcription	HUVEC	blood vessel
29	chr20:23114800-23116600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr20:23114800-23116600	Weak transcription	Fetal Muscle Leg	muscle
31	chr20:23115400-23117200	Weak transcription	A549	lung

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