Variant report

Variant	rs6076288
Chromosome Location	chr20:24838196-24838197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1029032	0.82[EUR][1000 genomes]
rs11087480	0.92[EUR][1000 genomes]
rs11700139	1.00[ASN][1000 genomes]
rs11700161	1.00[ASN][1000 genomes]
rs11906401	0.92[EUR][1000 genomes]
rs11906511	0.93[EUR][1000 genomes]
rs1571772	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2064404	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2150644	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4239751	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4815358	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs4815359	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs55651048	0.88[AMR][1000 genomes]
rs55681373	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55905952	1.00[ASN][1000 genomes]
rs55979003	1.00[ASN][1000 genomes]
rs56000345	1.00[ASN][1000 genomes]
rs56053259	0.87[EUR][1000 genomes]
rs56148678	0.93[EUR][1000 genomes]
rs56249107	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56299926	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56406017	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58353086	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036939	0.91[EUR][1000 genomes]
rs6036940	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036948	0.89[EUR][1000 genomes]
rs6049996	1.00[ASN][1000 genomes]
rs6050002	1.00[ASN][1000 genomes]
rs6050026	0.90[EUR][1000 genomes]
rs6050052	0.92[EUR][1000 genomes]
rs6050056	0.92[EUR][1000 genomes]
rs6050066	0.89[EUR][1000 genomes]
rs6050123	0.84[EUR][1000 genomes]
rs6050199	0.85[CEU][hapmap]
rs6076279	1.00[ASN][1000 genomes]
rs6076281	1.00[ASN][1000 genomes]
rs6076283	1.00[ASN][1000 genomes]
rs6076289	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076291	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076293	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083630	1.00[ASN][1000 genomes]
rs6083632	1.00[ASN][1000 genomes]
rs6083633	1.00[ASN][1000 genomes]
rs6083638	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6083639	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083645	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083646	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083647	0.92[EUR][1000 genomes]
rs6083649	0.92[EUR][1000 genomes]
rs6083650	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083651	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083653	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083657	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083697	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6083714	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs6106957	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106965	1.00[ASN][1000 genomes]
rs6106967	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114893	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62215819	1.00[ASN][1000 genomes]
rs62215821	1.00[ASN][1000 genomes]
rs62215822	1.00[ASN][1000 genomes]
rs62215823	1.00[ASN][1000 genomes]
rs62215824	1.00[ASN][1000 genomes]
rs62215826	1.00[ASN][1000 genomes]
rs6515535	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7262604	1.00[ASN][1000 genomes]
rs7269852	1.00[ASN][1000 genomes]
rs73101427	1.00[ASN][1000 genomes]
rs73108128	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73110258	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73110260	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337207	1.00[ASN][1000 genomes]
rs7509561	1.00[ASN][1000 genomes]
rs761368	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs765834	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs8114708	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8114760	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8117102	1.00[ASN][1000 genomes]
rs8117164	1.00[ASN][1000 genomes]
rs8119191	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120506	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8123541	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914308	0.90[EUR][1000 genomes]
rs914309	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24837200-24838200	Weak transcription	Thymus	Thymus
2	chr20:24837600-24839400	Enhancers	Fetal Thymus	thymus
3	chr20:24837600-24841200	ZNF genes & repeats	Dnd41	blood
4	chr20:24838000-24838800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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