Variant report

Variant	rs60763514
Chromosome Location	chr1:169619382-169619383
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3917671	0.92[AFR][1000 genomes]
rs73039406	0.92[AFR][1000 genomes]
rs73039412	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169616600-169619600	Enhancers	Primary T cells from cord blood	blood
2	chr1:169616800-169619600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:169616800-169619800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:169616800-169619800	Enhancers	Dnd41	blood
5	chr1:169616800-169620000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:169616800-169620000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:169616800-169620000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:169617000-169620600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:169617400-169619400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:169617400-169619800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:169617400-169620000	Enhancers	Thymus	Thymus
12	chr1:169617800-169619600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:169617800-169620000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:169618600-169620000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:169618600-169633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:169619000-169619400	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:169619000-169620800	Enhancers	Brain Substantia Nigra	brain
18	chr1:169619200-169620800	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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