Variant report

Variant	rs60763559
Chromosome Location	chr11:65125452-65125453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
2	chr11:65101225..65104158-chr11:65123210..65125603,2	K562	blood:
3	chr11:65123915..65126225-chr16:67902561..67904082,2	K562	blood:
4	chr11:65123264..65125729-chr11:65322609..65324877,2	K562	blood:
5	chr11:65119888..65122132-chr11:65123050..65125503,3	K562	blood:
6	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
7	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:
8	chr11:65121572..65123657-chr11:65125116..65127180,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270117	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000102898	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000133884	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17145218	0.83[EUR][1000 genomes]
rs2269224	1.00[ASN][1000 genomes]
rs2307266	1.00[ASN][1000 genomes]
rs4149830	0.83[EUR][1000 genomes]
rs4647575	0.97[EUR][1000 genomes]
rs4647576	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647577	0.97[EUR][1000 genomes]
rs4647587	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647599	0.97[EUR][1000 genomes]
rs57994718	0.81[EUR][1000 genomes]
rs60933608	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732319	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736579	1.00[ASN][1000 genomes]
rs7127811	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482271	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947014	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950149	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
6	nsv541065	chr11:65117387-65271894	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	835 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65123400-65131200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:65123400-65143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:65123600-65125600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:65123600-65125600	Weak transcription	Right Atrium	heart
5	chr11:65123600-65127000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:65123600-65143800	Weak transcription	Thymus	Thymus
7	chr11:65123800-65125600	Weak transcription	Esophagus	oesophagus
8	chr11:65123800-65129200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:65123800-65134200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:65124000-65129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:65124000-65129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:65124000-65129200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:65124000-65133800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:65124200-65129600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:65124400-65125800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:65124400-65127800	Enhancers	Fetal Intestine Small	intestine
17	chr11:65124600-65125800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:65124600-65126000	Enhancers	K562	blood
19	chr11:65124600-65127000	Weak transcription	Left Ventricle	heart
20	chr11:65124800-65126800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:65124800-65127000	Weak transcription	Fetal Brain Female	brain
22	chr11:65125000-65125600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:65125000-65125800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr11:65125000-65125800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:65125000-65126200	Enhancers	Liver	Liver
26	chr11:65125200-65125600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:65125200-65125800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:65125200-65125800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:65125200-65126000	Flanking Active TSS	HepG2	liver
30	chr11:65125400-65125600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr11:65125400-65125600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:65125400-65125600	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:65125400-65125600	Bivalent Enhancer	Fetal Lung	lung
34	chr11:65125400-65125800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:65125400-65125800	Enhancers	Stomach Mucosa	stomach
36	chr11:65125400-65126400	Enhancers	Duodenum Mucosa	Duodenum
37	chr11:65125400-65127800	Enhancers	Fetal Intestine Large	intestine

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