Variant report

Variant	rs60764176
Chromosome Location	chr6:150160417-150160418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150160320-150160427	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:150159974..150162736-chr6:150163125..150166318,3	K562	blood:
2	chr6:150153688..150155920-chr6:150160413..150161947,2	MCF-7	breast:
3	chr6:150160122..150165164-chr6:150183114..150187569,12	MCF-7	breast:
4	chr6:150159974..150162858-chr6:150163125..150167505,4	K562	blood:

Variant related genes	Relation type
LRP11	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6899726	1.00[AMR][1000 genomes]
rs9767306	1.00[AMR][1000 genomes]
rs9767608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
6	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
7	chr6:150132800-150161800	Weak transcription	Fetal Lung	lung
8	chr6:150133200-150161200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:150133200-150161800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:150133200-150162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:150135000-150161600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:150141400-150167200	Weak transcription	Right Atrium	heart
13	chr6:150143600-150161600	Weak transcription	Left Ventricle	heart
14	chr6:150146200-150167000	Weak transcription	Psoas Muscle	Psoas
15	chr6:150147800-150163600	Weak transcription	Fetal Brain Female	brain
16	chr6:150150600-150166400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:150151200-150161600	Weak transcription	Stomach Mucosa	stomach
18	chr6:150152400-150165400	Weak transcription	HSMMtube	muscle
19	chr6:150152600-150161600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:150152800-150161000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:150152800-150161200	Weak transcription	NHDF-Ad	bronchial
22	chr6:150152800-150161600	Weak transcription	Pancreas	Pancrea
23	chr6:150152800-150161800	Weak transcription	HSMM	muscle
24	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
25	chr6:150153000-150163600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:150153000-150167000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:150153000-150167800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:150153200-150161600	Weak transcription	Brain Substantia Nigra	brain
29	chr6:150155600-150161200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:150155800-150182600	Weak transcription	Dnd41	blood
31	chr6:150156400-150161000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:150156400-150161200	Weak transcription	A549	lung
33	chr6:150156400-150161200	Weak transcription	NHEK	skin
34	chr6:150156400-150168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:150156600-150160800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:150156800-150161200	Weak transcription	HMEC	breast
37	chr6:150157600-150161000	Weak transcription	NH-A	brain
38	chr6:150157600-150161600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:150157600-150161600	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:150157600-150167000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:150158000-150161400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:150158600-150161200	Weak transcription	Brain Anterior Caudate	brain
43	chr6:150158600-150161600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:150158600-150161800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:150158600-150163800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:150158600-150165400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:150158600-150167200	Weak transcription	Adipose Nuclei	Adipose
48	chr6:150158800-150161000	Weak transcription	NHLF	lung
49	chr6:150158800-150161200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:150158800-150161200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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