Variant report

Variant	rs60767857
Chromosome Location	chr7:127987077-127987078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr7:127986896-127987169	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127986655..127989567-chr7:127989980..127992814,3	K562	blood:
2	chr7:127985149..127987590-chr7:128025548..128027554,2	MCF-7	breast:
3	chr7:127985563..127989260-chr7:128027649..128030802,6	K562	blood:
4	chr7:127986230..127989260-chr7:128028040..128030111,4	K562	blood:
5	chr7:127986440..127989411-chr7:128026158..128028647,3	MCF-7	breast:
6	chr7:127986462..127988750-chr7:128027167..128028806,32	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17151981	1.00[AMR][1000 genomes]
rs17152005	1.00[AMR][1000 genomes]
rs56177738	1.00[AMR][1000 genomes]
rs73458948	1.00[AMR][1000 genomes]
rs73458949	1.00[AMR][1000 genomes]
rs73721356	1.00[AMR][1000 genomes]
rs73721363	1.00[AMR][1000 genomes]
rs73721364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv608400	chr7:127978820-128048194	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	esv2493565	chr7:127985695-128053377	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3478325	chr7:127986726-128053483	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3478326	chr7:127986726-128053483	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127984000-127989400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:127984400-127987600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:127984400-127987800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:127984400-127987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:127984400-127987800	Weak transcription	Brain Germinal Matrix	brain
6	chr7:127984400-127987800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:127984400-127987800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:127984600-127987400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:127984600-127987800	Weak transcription	Brain Anterior Caudate	brain
10	chr7:127984600-127989200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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