Variant report

Variant	rs60774059
Chromosome Location	chr1:47787266-47787267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17103268	1.00[AMR][1000 genomes]
rs4528158	1.00[AMR][1000 genomes]
rs56758748	1.00[AMR][1000 genomes]
rs56779238	1.00[AMR][1000 genomes]
rs56791949	1.00[AMR][1000 genomes]
rs57028704	1.00[AMR][1000 genomes]
rs57162997	1.00[AMR][1000 genomes]
rs57407602	1.00[AMR][1000 genomes]
rs57525972	1.00[AMR][1000 genomes]
rs57563765	1.00[AMR][1000 genomes]
rs57869712	1.00[AMR][1000 genomes]
rs58495352	1.00[AMR][1000 genomes]
rs58544837	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59163203	1.00[AMR][1000 genomes]
rs59697055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60145556	1.00[AMR][1000 genomes]
rs60407409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60947098	1.00[AMR][1000 genomes]
rs61121898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61262802	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47789200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:47780800-47791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:47783800-47787800	Weak transcription	HepG2	liver
7	chr1:47786400-47788800	Weak transcription	K562	blood
8	chr1:47787200-47788400	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:47787200-47790800	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links