Variant report

Variant	rs6077964
Chromosome Location	chr20:10917507-10917508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11904984	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409869	0.83[ASN][1000 genomes]
rs6074208	0.90[EUR][1000 genomes]
rs6077969	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6077970	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6077973	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6077974	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6077978	0.81[ASN][1000 genomes]
rs6108759	0.83[ASN][1000 genomes]
rs6131135	0.91[ASN][1000 genomes]
rs748989	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv912663	chr20:10891798-10963675	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv912664	chr20:10907037-10963675	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10901000-10920200	Weak transcription	Aorta	Aorta
2	chr20:10915000-10928200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:10916200-10918200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:10916600-10920000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:10916800-10919800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr20:10917200-10920000	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links