Variant report

Variant	rs60785901
Chromosome Location	chr11:16949472-16949473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16947090..16949629-chr11:17095736..17097514,2	MCF-7	breast:
2	chr11:16948844..16950381-chr11:16953392..16956002,2	K562	blood:
3	chr11:16946724..16949715-chr11:17035488..17037274,2	MCF-7	breast:
4	chr11:16949254..16952031-chr11:16954988..16957108,2	MCF-7	breast:
5	chr11:16945639..16949520-chr11:16949584..16951727,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272034	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000201403	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11024078	0.90[AFR][1000 genomes]
rs7117859	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16947600-16955400	Weak transcription	Gastric	stomach
2	chr11:16947800-16949800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:16947800-16951200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:16947800-16954200	Weak transcription	Pancreas	Pancrea
5	chr11:16948000-16954200	Weak transcription	Ovary	ovary
6	chr11:16948200-16949800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:16948200-16950200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:16948200-16951200	Enhancers	Fetal Heart	heart
9	chr11:16948200-16959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:16948400-16950800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:16948400-16967800	Weak transcription	HepG2	liver
12	chr11:16948600-16949800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr11:16948600-16951800	Weak transcription	Fetal Intestine Small	intestine
14	chr11:16948600-16954800	Weak transcription	Left Ventricle	heart
15	chr11:16948600-16954800	Weak transcription	Right Atrium	heart
16	chr11:16948600-16955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:16948800-16949800	Enhancers	Hela-S3	cervix
19	chr11:16949200-16949800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:16949200-16950000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
21	chr11:16949400-16957400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links