The 2.0 version of rSNPBase

Variant report

Variant rs6078783
Chromosome Location chr20:1335788-1335789
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1307600-1340400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:1310000-1348800 Weak transcription Placenta Amnion Placenta Amnion
3 chr20:1321600-1340400 Weak transcription K562 blood
4 chr20:1323000-1350600 Weak transcription Fetal Brain Male brain
5 chr20:1323200-1335800 Weak transcription HSMMtube muscle
6 chr20:1323400-1354000 Weak transcription Fetal Heart heart
7 chr20:1326000-1340800 Weak transcription NHDF-Ad bronchial
8 chr20:1326000-1350600 Weak transcription Right Atrium heart
9 chr20:1326800-1348200 Weak transcription H1 Cell Line embryonic stem cell
10 chr20:1327400-1338400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr20:1327600-1372200 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr20:1327800-1340600 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr20:1328200-1338600 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr20:1328600-1337000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr20:1330200-1338200 Weak transcription Fetal Kidney kidney
16 chr20:1330400-1340800 Weak transcription Colon Smooth Muscle Colon
17 chr20:1330600-1340600 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr20:1331000-1338400 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr20:1331600-1336800 Weak transcription Monocytes-CD14+_RO01746 blood
20 chr20:1331600-1349000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr20:1331600-1358200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr20:1332000-1340800 Weak transcription Brain Substantia Nigra brain
23 chr20:1332200-1338800 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr20:1332400-1336400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr20:1332400-1348400 Weak transcription Psoas Muscle Psoas
26 chr20:1332400-1349200 Weak transcription Colonic Mucosa Colon
27 chr20:1332800-1336000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr20:1332800-1336400 ZNF genes & repeats Fetal Intestine Large intestine
29 chr20:1333200-1336000 Strong transcription HUES64 Cell Line embryonic stem cell
30 chr20:1333200-1349000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr20:1333400-1336000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr20:1333400-1336200 Strong transcription Primary B cells from peripheral blood blood
33 chr20:1333400-1336600 Strong transcription Primary T helper cells PMA-I stimulated --
34 chr20:1333400-1337200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr20:1333400-1337400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr20:1333600-1336200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr20:1333600-1336200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr20:1333600-1336200 Strong transcription Primary T cells fromperipheralblood blood
39 chr20:1333600-1336400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr20:1333600-1336800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr20:1333600-1337000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr20:1333600-1338600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr20:1333800-1336000 ZNF genes & repeats Primary T cells from cord blood blood
44 chr20:1333800-1336200 Strong transcription Primary T helper naive cells fromperipheralblood blood
45 chr20:1333800-1336200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
46 chr20:1333800-1336200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr20:1333800-1336400 Strong transcription Fetal Thymus thymus
48 chr20:1333800-1337000 Weak transcription HUVEC blood vessel
49 chr20:1333800-1337200 Strong transcription Dnd41 blood
50 chr20:1333800-1338800 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015