Variant report

Variant	rs60788805
Chromosome Location	chr17:66930712-66930713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12103819	0.86[AFR][1000 genomes]
rs16973446	0.87[AFR][1000 genomes]
rs16973452	0.87[AFR][1000 genomes]
rs1807406	0.88[AFR][1000 genomes]
rs28439676	0.85[AFR][1000 genomes]
rs28450507	0.81[AFR][1000 genomes]
rs28490038	0.87[AFR][1000 genomes]
rs3826430	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147956	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4419114	0.86[AFR][1000 genomes]
rs960929	0.88[AFR][1000 genomes]
rs9893792	0.81[AFR][1000 genomes]
rs9894190	0.88[AFR][1000 genomes]
rs9900030	0.82[AFR][1000 genomes]
rs9909773	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1061151	chr17:66881617-66973917	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv908699	chr17:66885526-66933003	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv908700	chr17:66885526-66985992	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv908701	chr17:66888346-66978319	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1066412	chr17:66897540-66954067	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1846502	chr17:66899261-66966274	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1849165	chr17:66899261-66978319	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv908702	chr17:66899290-66933003	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv908703	chr17:66904001-66978319	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv908704	chr17:66925324-66959710	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66907000-66940800	Weak transcription	Spleen	Spleen
2	chr17:66908000-66949000	Weak transcription	Right Ventricle	heart
3	chr17:66916200-66934200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr17:66916200-66949000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr17:66916200-66949400	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:66916400-66938600	Weak transcription	Psoas Muscle	Psoas
7	chr17:66916400-66949200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr17:66916400-66949400	Weak transcription	Osteobl	bone
9	chr17:66921200-66941000	Weak transcription	Fetal Heart	heart
10	chr17:66923000-66939000	Weak transcription	K562	blood
11	chr17:66923400-66932600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:66923400-66936600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr17:66923400-66938600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:66923600-66932000	Weak transcription	Brain Anterior Caudate	brain
15	chr17:66923600-66932000	Weak transcription	Fetal Stomach	stomach
16	chr17:66923800-66932000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr17:66925600-66930800	Strong transcription	Liver	Liver
18	chr17:66927200-66937400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr17:66927400-66931200	Weak transcription	Ovary	ovary
20	chr17:66927400-66932000	Weak transcription	Brain Hippocampus Middle	brain
21	chr17:66927400-66938400	Weak transcription	Left Ventricle	heart
22	chr17:66927400-66948800	Weak transcription	Brain Substantia Nigra	brain
23	chr17:66927600-66932000	Weak transcription	Fetal Lung	lung
24	chr17:66927800-66932000	Weak transcription	HepG2	liver
25	chr17:66929200-66937200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr17:66929800-66931000	Strong transcription	Adipose Nuclei	Adipose
27	chr17:66929800-66932200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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