Variant report

Variant	rs60789360
Chromosome Location	chr12:119646330-119646331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119639986..119643300-chr12:119644923..119647932,3	MCF-7	breast:
2	chr12:119616176..119619939-chr12:119645007..119648032,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152137	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs890460	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899550	chr12:119581131-119654315	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832528	chr12:119638211-119793401	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119627800-119646600	Weak transcription	Gastric	stomach
2	chr12:119643200-119649800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:119644000-119647200	Enhancers	Colon Smooth Muscle	Colon
4	chr12:119644000-119647200	Enhancers	Fetal Muscle Leg	muscle
5	chr12:119644200-119647000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:119644200-119647000	Enhancers	Fetal Lung	lung
7	chr12:119644200-119647200	Enhancers	Rectal Smooth Muscle	rectum
8	chr12:119644600-119646800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:119644600-119647000	Enhancers	Brain Substantia Nigra	brain
10	chr12:119645000-119646800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr12:119645000-119647000	Enhancers	Brain Anterior Caudate	brain
12	chr12:119645000-119647000	Enhancers	Fetal Stomach	stomach
13	chr12:119645000-119647200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:119645200-119647200	Enhancers	Placenta	Placenta
15	chr12:119645200-119647200	Enhancers	Right Atrium	heart
16	chr12:119645200-119647200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr12:119645400-119646400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:119645400-119646600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr12:119645600-119648200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:119645600-119654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:119645800-119646600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:119645800-119646800	Enhancers	Fetal Heart	heart
23	chr12:119645800-119647200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr12:119645800-119647200	Enhancers	Right Ventricle	heart
25	chr12:119645800-119647400	Enhancers	Esophagus	oesophagus
26	chr12:119645800-119647600	Enhancers	Adipose Nuclei	Adipose
27	chr12:119646000-119647000	Enhancers	Aorta	Aorta
28	chr12:119646000-119647000	Enhancers	Psoas Muscle	Psoas
29	chr12:119646000-119647200	Enhancers	Left Ventricle	heart
30	chr12:119646200-119646400	Enhancers	Stomach Smooth Muscle	stomach
31	chr12:119646200-119646600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr12:119646200-119647000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:119646200-119647400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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