Variant report

Variant	rs60793770
Chromosome Location	chr16:82874798-82874799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55731405	1.00[AMR][1000 genomes]
rs58101558	1.00[AMR][1000 genomes]
rs58804740	1.00[AMR][1000 genomes]
rs58997376	1.00[AMR][1000 genomes]
rs59882642	1.00[AMR][1000 genomes]
rs60297392	1.00[AMR][1000 genomes]
rs60691277	1.00[AMR][1000 genomes]
rs61620508	1.00[AMR][1000 genomes]
rs7206755	1.00[AMR][1000 genomes]
rs7206771	1.00[AMR][1000 genomes]
rs74028590	1.00[AMR][1000 genomes]
rs74030303	1.00[AMR][1000 genomes]
rs74030324	1.00[AMR][1000 genomes]
rs74030806	1.00[AMR][1000 genomes]
rs74030809	1.00[AMR][1000 genomes]
rs74030810	1.00[AMR][1000 genomes]
rs74030811	1.00[AMR][1000 genomes]
rs74030812	1.00[AMR][1000 genomes]
rs74032603	1.00[AMR][1000 genomes]
rs74032604	1.00[AMR][1000 genomes]
rs74032610	1.00[AMR][1000 genomes]
rs74033621	1.00[AMR][1000 genomes]
rs9924636	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82848200-82898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:82856800-82876200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82863200-82892800	Weak transcription	HSMMtube	muscle
4	chr16:82866800-82878600	Weak transcription	Aorta	Aorta
5	chr16:82868200-82878200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr16:82868400-82876000	Weak transcription	HSMM	muscle
7	chr16:82868400-82878800	Weak transcription	Right Atrium	heart
8	chr16:82869400-82878800	Weak transcription	Right Ventricle	heart
9	chr16:82869600-82880000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:82874600-82874800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:82874600-82874800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr16:82874600-82875000	Enhancers	Left Ventricle	heart
13	chr16:82874600-82875400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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