Variant report

Variant	rs60794956
Chromosome Location	chr7:15895875-15895876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12535886	0.83[ASN][1000 genomes]
rs57799495	0.83[ASN][1000 genomes]
rs57924832	0.83[ASN][1000 genomes]
rs59178287	0.83[ASN][1000 genomes]
rs60123914	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61579344	0.83[ASN][1000 genomes]
rs73301836	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73301841	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73301843	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73301850	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73680293	1.00[ASN][1000 genomes]
rs73680295	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15892600-15896200	Enhancers	HUVEC	blood vessel
2	chr7:15893600-15901600	Weak transcription	Left Ventricle	heart
3	chr7:15894200-15901800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:15894400-15896400	Enhancers	Fetal Intestine Large	intestine
5	chr7:15894400-15897600	Enhancers	Fetal Lung	lung
6	chr7:15894600-15896200	Enhancers	Fetal Intestine Small	intestine
7	chr7:15895600-15896600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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