Variant report

Variant	rs60796269
Chromosome Location	chr12:7709493-7709494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17198726	0.81[EUR][1000 genomes]
rs59625431	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041155	chr12:7655137-7821891	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045650	chr12:7655137-7824995	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3405329	chr12:7656734-7712687	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7708000-7710800	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:7708200-7710000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:7708200-7710200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:7708600-7711200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:7708800-7709600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:7708800-7709800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:7708800-7710000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:7708800-7710200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:7708800-7710400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:7708800-7711200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:7709400-7709600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:7709400-7709800	Active TSS	Liver	Liver
13	chr12:7709400-7709800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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