Variant report

Variant	rs60801984
Chromosome Location	chr11:102124780-102124781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10750636	1.00[EUR][1000 genomes]
rs10791567	1.00[EUR][1000 genomes]
rs10791568	1.00[EUR][1000 genomes]
rs17885946	1.00[EUR][1000 genomes]
rs1894117	1.00[EUR][1000 genomes]
rs1942682	1.00[EUR][1000 genomes]
rs1942687	1.00[EUR][1000 genomes]
rs2187158	1.00[EUR][1000 genomes]
rs4754835	1.00[EUR][1000 genomes]
rs4754837	1.00[EUR][1000 genomes]
rs6590951	1.00[EUR][1000 genomes]
rs7110639	1.00[EUR][1000 genomes]
rs7924931	1.00[EUR][1000 genomes]
rs7931810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102116000-102126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:102117200-102130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:102123000-102124800	Enhancers	Fetal Intestine Large	intestine
4	chr11:102123000-102124800	Enhancers	Fetal Lung	lung
5	chr11:102123200-102124800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:102123200-102124800	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:102123200-102124800	Enhancers	NHEK	skin
8	chr11:102123200-102125000	Enhancers	Fetal Intestine Small	intestine
9	chr11:102123400-102125200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:102123800-102124800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:102123800-102125000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:102123800-102126800	Weak transcription	Osteobl	bone
13	chr11:102123800-102127000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:102124200-102124800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:102124200-102124800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:102124200-102125000	Enhancers	Placenta	Placenta
17	chr11:102124200-102125000	Enhancers	HepG2	liver
18	chr11:102124200-102125000	Enhancers	K562	blood
19	chr11:102124200-102126600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:102124400-102125000	Enhancers	Hela-S3	cervix
21	chr11:102124400-102126800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:102124400-102126800	Weak transcription	NH-A	brain
23	chr11:102124400-102127000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:102124400-102127000	Weak transcription	NHDF-Ad	bronchial
25	chr11:102124400-102127000	Weak transcription	NHLF	lung
26	chr11:102124600-102124800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:102124600-102125000	Enhancers	Esophagus	oesophagus
28	chr11:102124600-102125000	Enhancers	Stomach Mucosa	stomach
29	chr11:102124600-102126200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:102124600-102126200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:102124600-102126200	Weak transcription	HMEC	breast
32	chr11:102124600-102127000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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