Variant report
Variant | rs6080320 |
---|---|
Chromosome Location | chr20:16586067-16586068 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:16577829..16580516-chr20:16584380..16586339,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1105853 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2207205 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2328049 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4813228 | 0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4813229 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4813230 | 0.94[EUR][1000 genomes] |
rs4814513 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4814516 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4814517 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6034549 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6034552 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6034554 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6044161 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6044162 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6044169 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6044170 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6044171 | 0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6044173 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6044174 | 0.93[EUR][1000 genomes] |
rs6075081 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6080303 | 0.81[CHB][hapmap];0.83[TSI][hapmap] |
rs6080312 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6080315 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6080317 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6080330 | 0.96[EUR][1000 genomes] |
rs6111200 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135800 | 0.81[CHB][hapmap] |
rs6135809 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs928624 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs945239 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs945240 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1057674 | chr20:16564642-16593209 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
2 | esv2760669 | chr20:16564654-16587606 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
3 | nsv1061216 | chr20:16564668-16586544 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
4 | nsv1060264 | chr20:16565162-16586544 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
5 | esv3454156 | chr20:16566305-16586918 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
6 | esv3454158 | chr20:16566325-16586923 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
7 | esv3454157 | chr20:16566369-16586867 | Bivalent Enhancer Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
8 | esv3454159 | chr20:16566398-16586879 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
9 | esv3454160 | chr20:16566441-16586777 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
10 | esv16895 | chr20:16566460-16586787 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
11 | esv2421920 | chr20:16567202-16586634 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
12 | nsv470542 | chr20:16567202-16588308 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
13 | nsv442482 | chr20:16568058-16586634 | Enhancers Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
14 | nsv1057376 | chr20:16568062-16586067 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
15 | nsv1059010 | chr20:16568062-16586544 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
16 | nsv1055217 | chr20:16568062-16596470 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
17 | nsv458942 | chr20:16568129-16589003 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
18 | nsv585653 | chr20:16568129-16589003 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
19 | nsv514935 | chr20:16571383-16586590 | Enhancers Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
20 | nsv1060877 | chr20:16575001-16586544 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
21 | nsv1061807 | chr20:16575463-16586544 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
22 | nsv1064197 | chr20:16575463-16587230 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
23 | nsv1062741 | chr20:16575531-16586544 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16582200-16587400 | Weak transcription | Adipose Nuclei | Adipose |
2 | chr20:16582600-16587800 | Weak transcription | Fetal Brain Female | brain |
3 | chr20:16582600-16588000 | Weak transcription | Fetal Muscle Leg | muscle |
4 | chr20:16582800-16586200 | Weak transcription | Fetal Lung | lung |
5 | chr20:16584200-16587400 | Weak transcription | Fetal Brain Male | brain |