Variant report

Variant	rs60804698
Chromosome Location	chr6:56618684-56618685
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56614450..56616010-chr6:56617525..56619069,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58655846	0.87[AFR][1000 genomes]
rs58905074	0.93[AFR][1000 genomes]
rs59689935	1.00[AFR][1000 genomes]
rs59866096	0.82[AFR][1000 genomes]
rs60360068	1.00[AFR][1000 genomes]
rs61312094	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56593200-56621200	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56607600-56620600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:56608200-56621000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:56609200-56619200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:56611600-56625800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56612200-56620800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:56612400-56621800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:56614000-56621400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:56614200-56619200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:56614200-56619400	Enhancers	Osteobl	bone
11	chr6:56614400-56619400	Enhancers	NHDF-Ad	bronchial
12	chr6:56614400-56619600	Enhancers	Brain Hippocampus Middle	brain
13	chr6:56614800-56620600	Weak transcription	Aorta	Aorta
14	chr6:56615000-56618800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:56615000-56620000	Weak transcription	Psoas Muscle	Psoas
16	chr6:56615000-56620600	Weak transcription	Left Ventricle	heart
17	chr6:56615000-56620800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:56615000-56620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:56615000-56620800	Weak transcription	Right Atrium	heart
20	chr6:56615000-56620800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:56615000-56621000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:56615000-56621400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:56615000-56625000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:56615200-56619600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:56615200-56620800	Weak transcription	Stomach Mucosa	stomach
26	chr6:56615200-56621000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:56615200-56621000	Weak transcription	HUVEC	blood vessel
28	chr6:56615400-56620800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr6:56615600-56620000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:56615800-56620200	Weak transcription	Fetal Brain Male	brain
31	chr6:56615800-56624000	Enhancers	Fetal Heart	heart
32	chr6:56616600-56620000	Weak transcription	Fetal Lung	lung
33	chr6:56616600-56621000	Weak transcription	HSMMtube	muscle
34	chr6:56616800-56618800	Enhancers	Brain Substantia Nigra	brain
35	chr6:56616800-56620000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:56617000-56618800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:56617000-56620000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:56617000-56620800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:56617200-56618800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:56617200-56624400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:56617200-56624800	Enhancers	Brain Angular Gyrus	brain
42	chr6:56617400-56619800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:56617400-56620200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:56617400-56620600	Weak transcription	A549	lung
45	chr6:56617400-56620800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:56617400-56621000	Weak transcription	NHEK	skin
47	chr6:56617600-56620200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:56617600-56620800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:56617600-56620800	Weak transcription	NH-A	brain
50	chr6:56617600-56621000	Weak transcription	HMEC	breast

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