Variant report

Variant	rs6081084
Chromosome Location	chr20:1879449-1879450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1874716..1876877-chr20:1877685..1880567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198053	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066886	chr20:1821062-1885871	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1065935	chr20:1836556-1922528	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1876600-1879600	Enhancers	Primary B cells from peripheral blood	blood
2	chr20:1876600-1897600	Weak transcription	Small Intestine	intestine
3	chr20:1876600-1901000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr20:1876800-1879600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr20:1876800-1881200	Weak transcription	Ovary	ovary
6	chr20:1877000-1879600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr20:1877000-1880000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:1877000-1880200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:1877000-1880600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:1877000-1881000	Weak transcription	Esophagus	oesophagus
11	chr20:1877000-1881200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:1877000-1881200	Weak transcription	Left Ventricle	heart
13	chr20:1877000-1881800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr20:1877000-1881800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr20:1877000-1886400	Weak transcription	Aorta	Aorta
16	chr20:1877000-1887000	Weak transcription	NH-A	brain
17	chr20:1877000-1887800	Weak transcription	Gastric	stomach
18	chr20:1877000-1893200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr20:1877200-1879600	Weak transcription	Brain Germinal Matrix	brain
20	chr20:1877200-1879600	Weak transcription	Fetal Brain Male	brain
21	chr20:1877200-1881600	Enhancers	Placenta	Placenta
22	chr20:1877200-1881800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr20:1877400-1881400	Enhancers	Fetal Muscle Leg	muscle
24	chr20:1877600-1879600	Enhancers	Primary hematopoietic stem cells	blood
25	chr20:1877600-1879600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr20:1877600-1881800	Enhancers	Colon Smooth Muscle	Colon
27	chr20:1877800-1882000	Enhancers	Right Atrium	heart
28	chr20:1877800-1884000	Weak transcription	Pancreas	Pancrea
29	chr20:1877800-1887800	Weak transcription	Right Ventricle	heart
30	chr20:1877800-1900600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr20:1878000-1879600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr20:1878000-1887000	Weak transcription	HUVEC	blood vessel
33	chr20:1878000-1908200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr20:1878200-1879800	Weak transcription	Colonic Mucosa	Colon
35	chr20:1878200-1879800	Weak transcription	Osteobl	bone
36	chr20:1878200-1880000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr20:1878200-1889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr20:1878400-1879600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr20:1878400-1880400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr20:1878400-1880400	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr20:1878400-1882400	Enhancers	Fetal Heart	heart
42	chr20:1878600-1880200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr20:1878600-1880200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr20:1878600-1880200	Enhancers	Rectal Smooth Muscle	rectum
45	chr20:1878600-1881400	Enhancers	NHDF-Ad	bronchial
46	chr20:1878600-1894400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr20:1878800-1879600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr20:1878800-1880000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr20:1878800-1880000	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
50	chr20:1878800-1880000	Weak transcription	Duodenum Mucosa	Duodenum

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