Variant report

Variant	rs60819778
Chromosome Location	chr6:139941839-139941840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17069028	1.00[EUR][1000 genomes]
rs1954409	1.00[EUR][1000 genomes]
rs55771622	1.00[EUR][1000 genomes]
rs56735760	1.00[EUR][1000 genomes]
rs57662306	1.00[EUR][1000 genomes]
rs60045683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60089334	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61155453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899947	1.00[EUR][1000 genomes]
rs73554035	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73554049	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73570547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73775568	1.00[EUR][1000 genomes]
rs9495553	1.00[EUR][1000 genomes]
rs9495555	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv969451	chr6:139933131-139942320	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139929200-139944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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