Variant report

Variant	rs60822319
Chromosome Location	chr15:74257029-74257030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74218602..74222336-chr15:74255703..74258772,3	MCF-7	breast:
2	chr15:74243136..74244116-chr15:74256372..74257374,4	MCF-7	breast:
3	chr15:74220021..74220679-chr15:74256811..74257681,2	K562	blood:
4	chr15:74189422..74190292-chr15:74256826..74257988,3	MCF-7	breast:
5	chr15:74166119..74166863-chr15:74256630..74257329,4	MCF-7	breast:
6	chr15:74246924..74252106-chr15:74256220..74259297,4	MCF-7	breast:
7	chr15:74189390..74190576-chr15:74256738..74257798,11	MCF-7	breast:
8	chr15:74249498..74251558-chr15:74255585..74258590,3	MCF-7	breast:
9	chr15:74256478..74257329-chr15:74265377..74266348,2	K562	blood:
10	chr15:74243141..74244197-chr15:74256700..74257689,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3784563	0.92[ASN][1000 genomes]
rs3825941	0.89[ASN][1000 genomes]
rs4886809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028206	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74245400-74257400	Weak transcription	Fetal Lung	lung
2	chr15:74248200-74257200	Weak transcription	Right Ventricle	heart
3	chr15:74249400-74257400	Weak transcription	Adipose Nuclei	Adipose
4	chr15:74249800-74257400	Weak transcription	A549	lung
5	chr15:74250000-74257200	Weak transcription	Gastric	stomach
6	chr15:74250200-74257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74251800-74257200	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:74252000-74257200	Weak transcription	Stomach Mucosa	stomach
9	chr15:74252200-74257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:74252200-74257200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:74252400-74257200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:74252400-74257200	Weak transcription	Primary B cells from cord blood	blood
13	chr15:74252400-74257200	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:74252400-74257200	Weak transcription	Placenta	Placenta
15	chr15:74252400-74257200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:74252400-74257200	Weak transcription	HMEC	breast
17	chr15:74252400-74257200	Weak transcription	HSMM	muscle
18	chr15:74252400-74257200	Weak transcription	NH-A	brain
19	chr15:74252400-74257200	Weak transcription	NHLF	lung
20	chr15:74252400-74257400	Weak transcription	NHDF-Ad	bronchial
21	chr15:74252600-74257200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:74252600-74257200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:74252800-74257200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:74252800-74257200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:74253000-74257200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:74253000-74257200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:74254600-74257200	Weak transcription	Fetal Brain Male	brain
28	chr15:74254800-74257400	Weak transcription	Spleen	Spleen
29	chr15:74255000-74257200	Weak transcription	Osteobl	bone
30	chr15:74255200-74257400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:74255200-74257400	Weak transcription	HSMMtube	muscle
32	chr15:74255400-74257200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:74255800-74257400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:74255800-74260600	Weak transcription	HUVEC	blood vessel
35	chr15:74256400-74257200	Enhancers	Primary T cells from cord blood	blood
36	chr15:74256400-74257200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr15:74256400-74257200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr15:74256400-74257200	Enhancers	Thymus	Thymus
39	chr15:74256400-74257200	Enhancers	Dnd41	blood
40	chr15:74256400-74257400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:74256400-74257400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:74256400-74257400	Enhancers	Fetal Thymus	thymus
43	chr15:74256400-74259400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:74256600-74257200	Enhancers	GM12878-XiMat	blood
45	chr15:74256600-74257400	Weak transcription	Fetal Brain Female	brain
46	chr15:74256600-74259400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr15:74256600-74259800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:74257000-74257200	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr15:74257000-74257200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:74257000-74257200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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