Variant report

Variant	rs608236
Chromosome Location	chr8:103928940-103928941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103913695..103915719-chr8:103927933..103930318,2	MCF-7	breast:
2	chr8:103884385..103886058-chr8:103926996..103929208,2	MCF-7	breast:
3	chr8:103926652..103929593-chr8:103930931..103933539,2	K562	blood:
4	chr8:103876583..103878231-chr8:103928522..103930334,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000253320	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10104704	0.86[ASN][1000 genomes]
rs10808382	0.84[JPT][hapmap]
rs1138	0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1714399	0.86[ASN][1000 genomes]
rs1806299	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1961102	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1991927	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2117313	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2304346	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2436857	0.85[JPT][hapmap]
rs2458280	0.83[ASN][1000 genomes]
rs2570940	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs2570944	0.84[ASN][1000 genomes]
rs2570946	0.83[ASN][1000 genomes]
rs2570948	0.84[ASN][1000 genomes]
rs2679741	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2679744	0.85[ASN][1000 genomes]
rs2679746	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2679748	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2679758	0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2679759	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2916558	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2916560	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3018949	0.90[ASN][1000 genomes]
rs491770	0.86[ASN][1000 genomes]
rs492770	0.86[ASN][1000 genomes]
rs520393	0.90[ASN][1000 genomes]
rs522547	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs551241	0.86[ASN][1000 genomes]
rs560038	0.90[ASN][1000 genomes]
rs587946	0.91[CHD][hapmap]
rs599777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs601588	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs606335	0.87[ASN][1000 genomes]
rs613049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs613559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs642004	0.83[ASN][1000 genomes]
rs644299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs647313	0.86[ASN][1000 genomes]
rs650987	0.90[ASN][1000 genomes]
rs657000	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs666830	0.90[ASN][1000 genomes]
rs667927	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs676498	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7833202	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs892485	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs892486	0.95[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv891246	chr8:103928940-103967694	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103913400-103929800	Weak transcription	Psoas Muscle	Psoas
2	chr8:103922200-103929600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:103922800-103929800	Weak transcription	Fetal Brain Male	brain
4	chr8:103922800-103930600	Weak transcription	Ovary	ovary
5	chr8:103923000-103929400	Weak transcription	Left Ventricle	heart
6	chr8:103923000-103929600	Weak transcription	Placenta	Placenta
7	chr8:103923000-103931000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:103923000-103931000	Weak transcription	Brain Substantia Nigra	brain
9	chr8:103923000-103931600	Weak transcription	Fetal Stomach	stomach
10	chr8:103923000-103932000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:103923200-103929800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:103923200-103931000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:103923200-103935800	Weak transcription	Fetal Lung	lung
14	chr8:103923400-103931200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:103923400-103932000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:103923600-103929200	Weak transcription	Fetal Heart	heart
17	chr8:103923600-103931200	Weak transcription	HMEC	breast
18	chr8:103923600-103931600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:103926000-103931800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:103926000-103932000	Weak transcription	Small Intestine	intestine
21	chr8:103926000-103932600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:103926200-103929600	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:103926200-103930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:103926200-103931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:103926400-103930000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:103926400-103931000	Weak transcription	Aorta	Aorta
27	chr8:103926400-103931400	Weak transcription	Right Ventricle	heart
28	chr8:103926400-103932600	Weak transcription	Fetal Muscle Leg	muscle
29	chr8:103926400-103937400	Weak transcription	Lung	lung
30	chr8:103926600-103929800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:103926600-103931000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:103926600-103931000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:103926600-103936600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:103926800-103931000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:103926800-103931200	Weak transcription	Osteobl	bone
36	chr8:103926800-103931800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:103926800-103932600	Weak transcription	NHDF-Ad	bronchial
38	chr8:103927000-103931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:103927200-103931000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:103927200-103931000	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:103927800-103929400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:103927800-103929400	Weak transcription	Pancreas	Pancrea
43	chr8:103927800-103930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:103927800-103930600	Weak transcription	Right Atrium	heart
45	chr8:103927800-103939800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:103927800-103941600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr8:103928800-103929000	Enhancers	Adipose Nuclei	Adipose
48	chr8:103928800-103933400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links