Variant report

Variant	rs60824158
Chromosome Location	chr9:115651425-115651426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:115647996..115651532-chr9:115651792..115654330,5	K562	blood:

Variant related genes	Relation type
ENSG00000119457	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16917440	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1925078	0.87[EUR][1000 genomes]
rs41280193	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41280195	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62576455	0.82[EUR][1000 genomes]
rs62576456	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62577669	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62577670	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62577673	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2757352	chr9:115648457-115664299	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115624200-115652600	Weak transcription	Fetal Heart	heart
2	chr9:115631800-115652200	Weak transcription	Gastric	stomach
3	chr9:115633000-115652600	Weak transcription	Left Ventricle	heart
4	chr9:115633200-115652400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:115633200-115652400	Weak transcription	Right Ventricle	heart
6	chr9:115633800-115652600	Weak transcription	Liver	Liver
7	chr9:115634800-115651800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:115643200-115652600	Weak transcription	Brain Anterior Caudate	brain
9	chr9:115643200-115652800	Weak transcription	Ovary	ovary
10	chr9:115643400-115651600	Weak transcription	Primary B cells from cord blood	blood
11	chr9:115643400-115652400	Weak transcription	Brain Substantia Nigra	brain
12	chr9:115643600-115652200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:115643600-115652600	Weak transcription	Brain Angular Gyrus	brain
14	chr9:115643800-115651800	Weak transcription	Lung	lung
15	chr9:115644000-115651800	Weak transcription	Spleen	Spleen
16	chr9:115644000-115652000	Weak transcription	Pancreas	Pancrea
17	chr9:115644000-115652800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:115644200-115652200	Weak transcription	Adipose Nuclei	Adipose
19	chr9:115644200-115652200	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:115644200-115652600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:115645600-115651800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:115646800-115651600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:115646800-115651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:115647000-115652800	Weak transcription	HSMMtube	muscle
25	chr9:115647200-115652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:115647400-115652200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:115647400-115652600	Weak transcription	HMEC	breast
28	chr9:115647400-115652600	Weak transcription	HSMM	muscle
29	chr9:115647600-115652200	Weak transcription	Osteobl	bone
30	chr9:115649800-115652600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr9:115650800-115651800	Active TSS	Fetal Thymus	thymus
32	chr9:115650800-115653000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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