Variant report

Variant	rs6082520
Chromosome Location	chr20:21812118-21812119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1000334	0.88[ASN][1000 genomes]
rs1014883	0.88[ASN][1000 genomes]
rs1014884	0.88[ASN][1000 genomes]
rs1014885	0.88[ASN][1000 genomes]
rs11087364	0.88[ASN][1000 genomes]
rs1155710	0.86[ASN][1000 genomes]
rs13039748	0.88[ASN][1000 genomes]
rs1474928	0.88[ASN][1000 genomes]
rs1535199	0.88[ASN][1000 genomes]
rs1535200	0.86[ASN][1000 genomes]
rs1535201	0.88[ASN][1000 genomes]
rs1535202	0.88[ASN][1000 genomes]
rs1998076	0.85[ASN][1000 genomes]
rs2010733	0.88[ASN][1000 genomes]
rs2016964	0.88[ASN][1000 genomes]
rs2180438	0.88[ASN][1000 genomes]
rs2180439	0.88[ASN][1000 genomes]
rs2208052	0.88[ASN][1000 genomes]
rs2224261	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328678	0.85[ASN][1000 genomes]
rs2328679	0.85[ASN][1000 genomes]
rs2876614	0.88[ASN][1000 genomes]
rs2876622	0.81[ASN][1000 genomes]
rs4281974	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4405823	0.88[ASN][1000 genomes]
rs4815071	0.88[ASN][1000 genomes]
rs4815072	0.88[ASN][1000 genomes]
rs4815073	0.84[ASN][1000 genomes]
rs4815076	0.87[ASN][1000 genomes]
rs4815080	0.88[ASN][1000 genomes]
rs4815081	0.85[ASN][1000 genomes]
rs4815082	0.85[ASN][1000 genomes]
rs6035961	0.88[ASN][1000 genomes]
rs6035968	0.88[ASN][1000 genomes]
rs6035969	0.88[ASN][1000 genomes]
rs6035970	0.88[ASN][1000 genomes]
rs6035980	0.85[ASN][1000 genomes]
rs6035982	0.83[ASN][1000 genomes]
rs6047653	0.88[ASN][1000 genomes]
rs6047658	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6047660	0.88[ASN][1000 genomes]
rs6047661	0.88[ASN][1000 genomes]
rs6047662	0.88[ASN][1000 genomes]
rs6047663	0.88[ASN][1000 genomes]
rs6047676	0.87[ASN][1000 genomes]
rs6047677	0.88[ASN][1000 genomes]
rs6047679	0.88[ASN][1000 genomes]
rs6047681	0.88[ASN][1000 genomes]
rs6047682	0.88[ASN][1000 genomes]
rs6047683	0.88[ASN][1000 genomes]
rs6047684	0.88[ASN][1000 genomes]
rs6047691	0.88[ASN][1000 genomes]
rs6047692	0.88[ASN][1000 genomes]
rs6047694	0.88[ASN][1000 genomes]
rs6047705	0.85[ASN][1000 genomes]
rs6047709	0.82[ASN][1000 genomes]
rs6047713	0.83[ASN][1000 genomes]
rs6075842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075843	0.88[ASN][1000 genomes]
rs6075852	0.87[ASN][1000 genomes]
rs6075853	0.87[ASN][1000 genomes]
rs6075854	0.87[ASN][1000 genomes]
rs6075855	0.87[ASN][1000 genomes]
rs6082512	0.83[ASN][1000 genomes]
rs6082513	0.83[ASN][1000 genomes]
rs6082517	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6082519	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6082524	0.88[ASN][1000 genomes]
rs6082525	0.88[ASN][1000 genomes]
rs6082533	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6082540	0.88[ASN][1000 genomes]
rs6082541	0.87[ASN][1000 genomes]
rs6082553	0.84[ASN][1000 genomes]
rs6106421	0.88[ASN][1000 genomes]
rs6113365	0.80[AMR][1000 genomes]
rs6113393	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6113394	0.88[ASN][1000 genomes]
rs6113395	0.88[ASN][1000 genomes]
rs6113404	0.88[ASN][1000 genomes]
rs6137444	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs718664	0.84[ASN][1000 genomes]
rs7261950	0.84[ASN][1000 genomes]
rs761890	0.85[ASN][1000 genomes]
rs761891	0.85[ASN][1000 genomes]
rs764777	0.88[ASN][1000 genomes]
rs8116929	0.88[ASN][1000 genomes]
rs8121238	0.88[ASN][1000 genomes]
rs8122229	0.88[ASN][1000 genomes]
rs932540	0.85[ASN][1000 genomes]
rs966604	0.82[ASN][1000 genomes]
rs987050	0.88[ASN][1000 genomes]
rs997078	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21808800-21816800	Weak transcription	Colon Smooth Muscle	Colon
2	chr20:21811800-21812800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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