Variant report

Variant	rs60826441
Chromosome Location	chr15:31693422-31693423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs74010630	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010643	1.00[AMR][1000 genomes]
rs74010653	1.00[AMR][1000 genomes]
rs74010654	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31685800-31694000	Weak transcription	Aorta	Aorta
2	chr15:31686000-31696200	Weak transcription	Gastric	stomach
3	chr15:31688800-31695200	Enhancers	Osteobl	bone
4	chr15:31689600-31699000	Enhancers	Fetal Thymus	thymus
5	chr15:31689800-31694600	Weak transcription	Ovary	ovary
6	chr15:31691000-31694800	Weak transcription	Dnd41	blood
7	chr15:31691200-31694400	Weak transcription	Adipose Nuclei	Adipose
8	chr15:31691200-31694800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:31691200-31697000	Weak transcription	Primary T cells from cord blood	blood
10	chr15:31691400-31694800	Weak transcription	Fetal Heart	heart
11	chr15:31691400-31695000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:31691400-31696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:31691400-31699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:31691800-31693600	Weak transcription	Lung	lung
15	chr15:31691800-31694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:31692000-31693600	Weak transcription	Spleen	Spleen
17	chr15:31692000-31693800	Weak transcription	Left Ventricle	heart
18	chr15:31692000-31697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:31692000-31697600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:31692000-31697600	Weak transcription	Stomach Mucosa	stomach
21	chr15:31692200-31697000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:31692400-31694000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:31692400-31694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:31692400-31694800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:31692400-31696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:31692400-31697200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:31692400-31697200	Weak transcription	Thymus	Thymus
28	chr15:31692600-31693800	Weak transcription	Placenta	Placenta
29	chr15:31692600-31694600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:31692600-31694800	Weak transcription	HSMM	muscle
31	chr15:31692600-31695000	Weak transcription	A549	lung
32	chr15:31692600-31696200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:31692800-31694000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:31692800-31694400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:31692800-31694600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:31692800-31694800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:31692800-31695200	Weak transcription	NH-A	brain
38	chr15:31692800-31695600	Weak transcription	HMEC	breast
39	chr15:31692800-31696800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:31693000-31695000	Enhancers	Right Atrium	heart
41	chr15:31693200-31694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:31693200-31694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:31693200-31694400	Weak transcription	NHEK	skin
44	chr15:31693200-31694600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:31693200-31694800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:31693200-31695200	Weak transcription	Hela-S3	cervix
47	chr15:31693200-31698800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:31693400-31693800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:31693400-31693800	Weak transcription	NHDF-Ad	bronchial
50	chr15:31693400-31693800	Weak transcription	NHLF	lung

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