Variant report

Variant	rs6082699
Chromosome Location	chr20:22403651-22403652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1366855	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1366856	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181062	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048085	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048092	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048093	0.84[ASN][1000 genomes]
rs6048094	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6075913	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6075914	0.97[ASN][1000 genomes]
rs6137656	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137657	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833942	chr20:22283122-22440749	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22394200-22405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:22400000-22404000	Weak transcription	A549	lung
3	chr20:22400200-22415600	Weak transcription	Pancreas	Pancrea
4	chr20:22401800-22404000	Weak transcription	K562	blood
5	chr20:22403000-22405000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:22403600-22406000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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