Variant report

Variant	rs60833819
Chromosome Location	chr6:142276188-142276189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1006256	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10499228	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1125602	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12207173	0.97[ASN][1000 genomes]
rs12664387	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13191355	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13199965	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13203129	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13205554	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13216616	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13219922	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1336272	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1414743	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1537864	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17071180	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17071231	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2039608	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2152589	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2784947	0.90[ASN][1000 genomes]
rs34694977	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36042829	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4434485	0.86[ASN][1000 genomes]
rs4642496	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56086504	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56259365	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66470467	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67214925	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6917831	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917832	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918138	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754052	0.87[ASN][1000 genomes]
rs7767107	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7774022	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7775955	0.86[ASN][1000 genomes]
rs9285496	0.92[ASN][1000 genomes]
rs9496171	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496172	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496179	0.87[ASN][1000 genomes]
rs9496192	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9496193	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830823	chr6:142111420-142305417	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029504	chr6:142131846-142333198	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538458	chr6:142131846-142333198	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886729	chr6:142192725-142277769	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv604792	chr6:142192725-142399251	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv464067	chr6:142214093-142283198	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv604793	chr6:142214093-142283198	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv886730	chr6:142214093-142299345	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1019170	chr6:142234933-142397088	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv464068	chr6:142263201-142316177	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142274200-142276200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:142274600-142276800	Weak transcription	Liver	Liver
3	chr6:142274800-142284000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:142275400-142276200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:142275400-142277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:142275400-142278000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:142276000-142276200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:142276000-142276600	Weak transcription	Aorta	Aorta
9	chr6:142276000-142277200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:142276000-142277800	Enhancers	Stomach Smooth Muscle	stomach

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