Variant report

Variant	rs60837609
Chromosome Location	chr4:8014574-8014575
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7806581..7808350-chr4:8014117..8016969,2	MCF-7	breast:
2	chr4:8010549..8013610-chr4:8014316..8016404,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163995	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16841559	0.92[ASN][1000 genomes]
rs28439020	0.92[ASN][1000 genomes]
rs28540402	0.93[ASN][1000 genomes]
rs7435224	0.84[ASN][1000 genomes]
rs9990519	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv829852	chr4:7991906-8151267	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878580	chr4:8012167-8045469	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8007200-8018000	Weak transcription	Psoas Muscle	Psoas
2	chr4:8007800-8022000	Weak transcription	Esophagus	oesophagus
3	chr4:8010400-8015400	Weak transcription	Aorta	Aorta
4	chr4:8010600-8052000	Weak transcription	Left Ventricle	heart
5	chr4:8011200-8018200	Weak transcription	Spleen	Spleen
6	chr4:8012200-8014800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:8012400-8015400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:8012400-8039000	Weak transcription	Gastric	stomach
9	chr4:8012600-8016200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:8012800-8017200	Weak transcription	Right Atrium	heart
11	chr4:8012800-8035000	Weak transcription	Pancreas	Pancrea
12	chr4:8013000-8016400	Weak transcription	Brain Anterior Caudate	brain
13	chr4:8013000-8020600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:8013000-8021400	Weak transcription	Fetal Intestine Small	intestine
15	chr4:8013000-8036600	Weak transcription	Right Ventricle	heart
16	chr4:8013200-8017000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:8013200-8017000	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:8013200-8017000	Weak transcription	Fetal Heart	heart
19	chr4:8013200-8017200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:8013200-8018200	Weak transcription	Fetal Intestine Large	intestine
21	chr4:8013200-8020400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:8013200-8020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:8013400-8017000	Weak transcription	Brain Substantia Nigra	brain
24	chr4:8013400-8017200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:8013600-8014600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:8014000-8017200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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