Variant report

Variant	rs60843615
Chromosome Location	chr7:16129471-16129472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1527214	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169282	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979410	1.00[AMR][1000 genomes]
rs7786887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787646	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792344	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16122200-16133000	Weak transcription	Psoas Muscle	Psoas
2	chr7:16122400-16135400	Weak transcription	Left Ventricle	heart
3	chr7:16124400-16131400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:16127400-16131000	Weak transcription	HUVEC	blood vessel
5	chr7:16128600-16131400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:16129400-16129800	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links