Variant report

Variant	rs60845146
Chromosome Location	chr11:66755207-66755208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66753675..66756281-chr11:67166786..67169328,2	MCF-7	breast:
2	chr11:66749306..66751873-chr11:66755203..66757268,2	K562	blood:
3	chr11:66651148..66654052-chr11:66754978..66757094,2	K562	blood:
4	chr11:66748815..66755953-chr11:66843606..66849844,15	MCF-7	breast:
5	chr11:66751363..66756232-chr11:66844314..66849671,8	MCF-7	breast:
6	chr11:66753318..66755986-chr11:66757974..66761655,4	MCF-7	breast:
7	chr11:66748233..66751062-chr11:66754881..66756647,2	MCF-7	breast:
8	chr11:66751953..66755411-chr11:66822533..66828022,8	MCF-7	breast:
9	chr11:66658390..66661690-chr11:66751725..66755262,3	K562	blood:
10	chr11:66622222..66625021-chr11:66753406..66755313,2	MCF-7	breast:
11	chr11:66733106..66735864-chr11:66753931..66756641,2	MCF-7	breast:
12	chr11:66754016..66755985-chr11:66790272..66792414,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173156	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000172531	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11227635	0.96[ASN][1000 genomes]
rs11227636	0.87[ASN][1000 genomes]
rs11227641	0.93[ASN][1000 genomes]
rs11227659	0.80[ASN][1000 genomes]
rs11227660	0.80[ASN][1000 genomes]
rs1253436	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66748800-66755800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:66748800-66756000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:66753400-66755600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:66754000-66764000	Weak transcription	Right Atrium	heart
5	chr11:66754400-66755600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:66754600-66755400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:66754600-66755600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:66754600-66755600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:66754600-66755600	Enhancers	A549	lung
10	chr11:66754800-66755400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:66754800-66755400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:66754800-66755400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:66754800-66755400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:66754800-66755400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:66754800-66755600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:66754800-66755600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:66754800-66755600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:66754800-66755600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:66754800-66755600	Enhancers	Placenta	Placenta
20	chr11:66754800-66755600	Enhancers	K562	blood
21	chr11:66754800-66755800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:66754800-66755800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:66755000-66755400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr11:66755000-66755400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:66755000-66755600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:66755000-66755600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:66755000-66755800	Flanking Active TSS	HepG2	liver
28	chr11:66755200-66755400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:66755200-66755400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:66755200-66755400	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr11:66755200-66755600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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