Variant report

Variant	rs60848410
Chromosome Location	chr11:73008349-73008350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73008083..73009994-chr11:73047285..73048973,2	MCF-7	breast:
2	chr11:73006048..73010215-chr11:73011850..73015047,4	MCF-7	breast:
3	chr11:72998137..73001549-chr11:73005628..73009315,3	MCF-7	breast:
4	chr11:73003244..73004746-chr11:73006460..73008526,2	K562	blood:
5	chr11:73006667..73009055-chr11:73009354..73011828,3	K562	blood:
6	chr11:73008316..73010568-chr11:73017508..73019112,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57132806	0.90[AFR][1000 genomes]
rs57422730	0.83[AFR][1000 genomes]
rs57661356	0.83[AFR][1000 genomes]
rs57903912	0.90[AFR][1000 genomes]
rs58352880	0.90[AFR][1000 genomes]
rs59000654	0.81[AFR][1000 genomes]
rs60148500	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
2	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
3	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
4	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:73006600-73009400	Strong transcription	Spleen	Spleen
8	chr11:73006600-73011400	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:73006600-73011600	Weak transcription	HSMMtube	muscle
10	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
11	chr11:73006800-73009400	Strong transcription	A549	lung
12	chr11:73006800-73010200	Strong transcription	Fetal Intestine Small	intestine
13	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart
14	chr11:73007000-73009000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:73007000-73009800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:73007000-73010200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:73007000-73011400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:73007000-73017800	Weak transcription	Osteobl	bone
19	chr11:73007200-73009000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:73007200-73009000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:73007200-73009200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:73007200-73010200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:73007200-73011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:73007200-73011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:73007400-73009400	Strong transcription	Placenta Amnion	Placenta Amnion
26	chr11:73007600-73008400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:73007800-73008400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:73008000-73008400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:73008000-73009800	Strong transcription	Placenta	Placenta
30	chr11:73008200-73009600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:73008200-73010800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:73008200-73017800	Weak transcription	Right Ventricle	heart

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