Variant report

Variant	rs60861772
Chromosome Location	chr11:83812495-83812496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11824023	1.00[AMR][1000 genomes]
rs57093812	1.00[AMR][1000 genomes]
rs61021804	1.00[AMR][1000 genomes]
rs7937268	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv975119	chr11:83811956-83812901	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83801400-83813400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:83803000-83812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83808600-83812800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83810200-83812600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83810600-83812600	Weak transcription	Fetal Heart	heart
6	chr11:83811600-83814800	Enhancers	Brain Angular Gyrus	brain
7	chr11:83811600-83814800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83812200-83812800	Enhancers	Fetal Brain Male	brain
9	chr11:83812200-83814800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:83812200-83814800	Enhancers	Brain Anterior Caudate	brain
11	chr11:83812200-83814800	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83812200-83814800	Enhancers	Brain Hippocampus Middle	brain
13	chr11:83812400-83814800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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